PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0014700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Nin-like
Protein Properties Length: 160aa    MW: 18150 Da    PI: 11.3809
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0014700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK59.18.3e-1968115350
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                     k +++ d+s+yF+lp ++AA++L++c T LK+  R++ ++RWPhRk++
  Spipo9G0014700  68 KLLTFMDVSQYFHLPAAEAAQKLQICGTSLKKVTRKFLVNRWPHRKVR 115
                     6799******************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.9757137IPR003035RWP-RK domain
PfamPF020422.5E-1770115IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDYPDDYVLP TGTMKLQGSP IIPIQGGHAV EASQPSHAVE GRIKRRGRKK SRHQIQKTGM  60
AAQRERIKLL TFMDVSQYFH LPAAEAAQKL QICGTSLKKV TRKFLVNRWP HRKVRCQNKN  120
KTKNLRSASK VLNLRRDNED SGPRPDRELG TSRDLRVLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-08RWP-RK domain-containing protein